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I am usually working on local mySQL server with local database. When I have my work finished I need a sql script with metadata changes to execute on production server. I know, I can copy data from "SQl log", but when I forgot do this, all data are lost. There should be a checkbox to turn on/off logging and saving log file to disk.

It shouldn't be difficult but very usefull.

This, or possibilities to append last queries to sql file. I am executing query, and instead of overwrite existing file, I'd like to append last queries to this existing file.

You can use Schema/Data Comparison tools for synchronization with production server.

For more information see article The Basics of Qualitative Schema Comparison here
http://www.devart.com/dbforge/mysql/stu ... rison.html